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This is an audio version of the Wikipedia Article: https://en.wikipedia.org/wiki/BioRuby 00:00:58 1 History 00:01:07 1.1 BioRuby 00:02:44 1.2 Version historysup[8]/sup 00:03:27 2 Installation 00:03:55 2.1 Installation of BioRuby 00:04:05 2.1.1 Mac OS X/Unix/Linux 00:04:46 2.1.2 Windows 00:05:06 2.2 Usage 00:05:36 3 Basic Syntaxsup[10]/sup 00:06:03 3.1 Basic Sequence Manipulation 00:06:13 3.1.1 String to Bio::Sequence object 00:06:29 3.1.2 Bio::Sequence object to String 00:06:55 3.2 Translation 00:07:04 3.2.1 Translating a DNA or RNA Sequence or SymbolList to Protein 00:07:35 3.2.2 Translating a single codon to a single amino acid 00:08:19 3.3 Sequence I/O 00:08:28 3.3.1 Writing Sequences in Fasta format 00:08:50 3.3.2 Reading in a Fasta file 00:09:26 4 Classes and Modules 00:09:36 4.1 Major Classes 00:09:55 4.1.1 Basic Data Structure 00:10:13 4.1.2 Databases and sequence file formats 00:10:31 4.1.3 Wrapper and parsers for bioinformatics tool 00:10:50 4.1.4 File, network and database I/O 00:11:09 5 Biogem 00:12:09 5.1 Popular Biogems 00:12:18 6 Plugins 00:12:35 7 See alsosup[14]/sup 00:12:44 7.1 BioRuby 00:13:01 7.2 Ruby/bioinformatics links 00:13:20 7.3 Sister projects 00:13:47 7.4 Blogs Listening is a more natural way of learning, when compared to reading. Written language only began at around 3200 BC, but spoken language has existed long ago. Learning by listening is a great way to: - increases imagination and understanding - improves your listening skills - improves your own spoken accent - learn while on the move - reduce eye strain Now learn the vast amount of general knowledge available on Wikipedia through audio (audio article). You could even learn subconsciously by playing the audio while you are sleeping! If you are planning to listen a lot, you could try using a bone conduction headphone, or a standard speaker instead of an earphone. Listen on Google Assistant through Extra Audio: https://assistant.google.com/services... Other Wikipedia audio articles at: https://www.youtube.com/results?searc... Upload your own Wikipedia articles through: https://github.com/nodef/wikipedia-tts Speaking Rate: 0.7260053639486325 Voice name: en-GB-Wavenet-B "I cannot teach anybody anything, I can only make them think." - Socrates SUMMARY ======= BioRuby is a collection of open-source Ruby code, comprising classes for computational molecular biology and bioinformatics. It contains classes for DNA and protein sequence analysis, sequence alignment, biological database parsing, structural biology and other bioinformatics tasks.BioRuby is released under the GNU GPL version 2 or Ruby licence and is one of a number of Bio* projects, designed to reduce code duplication.In 2011, the BioRuby project introduced the Biogem software plugin system and are listed on biogems.info, with two or three new plugins added every month. BioRuby is managed via the bioruby.org website and BioRuby GitHub repository.

This is an audio version of the Wikipedia Article: https://en.wikipedia.org/wiki/BioRuby 00:00:58 1 History 00:01:07 1.1 BioRuby 00:02:44 1.2 Version historysup[8]/sup 00:03:27 2 Installation 00:03:55 2.1 Installation of BioRuby 00:04:05 2.1.1 Mac OS X/Unix/Linux 00:04:46 2.1.2 Windows 00:05:06 2.2 Usage 00:05:36 3 Basic Syntaxsup[10]/sup 00:06:03 3.1 Basic Sequence Manipulation 00:06:13 3.1.1 String to Bio::Sequence object 00:06:29 3.1.2 Bio::Sequence object to String 00:06:55 3.2 Translation 00:07:04 3.2.1 Translating a DNA or RNA Sequence or SymbolList to Protein 00:07:35 3.2.2 Translating a single codon to a single amino acid 00:08:19 3.3 Sequence I/O 00:08:28 3.3.1 Writing Sequences in Fasta format 00:08:50 3.3.2 Reading in a Fasta file 00:09:26 4 Classes and Modules 00:09:36 4.1 Major Classes 00:09:55 4.1.1 Basic Data Structure 00:10:13 4.1.2 Databases and sequence file formats 00:10:31 4.1.3 Wrapper and parsers for bioinformatics tool 00:10:50 4.1.4 File, network and database I/O 00:11:09 5 Biogem 00:12:09 5.1 Popular Biogems 00:12:18 6 Plugins 00:12:35 7 See alsosup[14]/sup 00:12:44 7.1 BioRuby 00:13:01 7.2 Ruby/bioinformatics links 00:13:20 7.3 Sister projects 00:13:47 7.4 Blogs Listening is a more natural way of learning, when compared to reading. Written language only began at around 3200 BC, but spoken language has existed long ago. Learning by listening is a great way to: - increases imagination and understanding - improves your listening skills - improves your own spoken accent - learn while on the move - reduce eye strain Now learn the vast amount of general knowledge available on Wikipedia through audio (audio article). You could even learn subconsciously by playing the audio while you are sleeping! If you are planning to listen a lot, you could try using a bone conduction headphone, or a standard speaker instead of an earphone. Listen on Google Assistant through Extra Audio: https://assistant.google.com/services... Other Wikipedia audio articles at: https://www.youtube.com/results?searc... Upload your own Wikipedia articles through: https://github.com/nodef/wikipedia-tts Speaking Rate: 0.7260053639486325 Voice name: en-GB-Wavenet-B "I cannot teach anybody anything, I can only make them think." - Socrates SUMMARY ======= BioRuby is a collection of open-source Ruby code, comprising classes for computational molecular biology and bioinformatics. It contains classes for DNA and protein sequence analysis, sequence alignment, biological database parsing, structural biology and other bioinformatics tasks.BioRuby is released under the GNU GPL version 2 or Ruby licence and is one of a number of Bio* projects, designed to reduce code duplication.In 2011, the BioRuby project introduced the Biogem software plugin system and are listed on biogems.info, with two or three new plugins added every month. BioRuby is managed via the bioruby.org website and BioRuby GitHub repository.